A thesis for the Doctor of Philosophy (PhD) by Research in Archaeology must explore human societies of the past using their material remains and must implement the development of archaeology as a scientific discipline. Archaeological methods and theories should be explained using case studies from the continents of Africa, Asia, Australia, Europe, and the Americas. The dissertation should include the latest developments in this field and present theories and practices found in scientific reality concerning the latest archaeological discoveries.

The Ph.D. graduate has in-depth theoretical knowledge in all principal fields of Egyptology and a detailed overview and an up-to-date understanding of the current state of research and associated problems. On the basis of the upheld Ph.D. dissertation, he/she is able to demonstrate exceptional quality in his/her specific specialization. The scholarly, language and analytical proficiency and skills of the graduate make him/her fully equipped for a professional scholarly and pedagogic pursuit on an international level. The Ph.D. graduate may be employed in many top-rated institutions centered on the study of antiquity, as well as on the level of effective top executives in institutions partaking in cultural, political, economic or trade relations between the Czech Republic and Egypt.

Research Degrees (MPhil/PhD) in History of Art and/or Archaeology undertaking a research degree is an intense and personally rewarding experience. A full-time doctoral student has three years to complete a full draft of their thesis and then a further one year for writing up (known as a 3+1 degree).